Abstract: Problems that single seed varieties，poor quality and dependence on imports influenced the modernization of fruit nursery stock industry process in China.Improving quality and increasing varieties of fruit nursery stock seed were the key to enhance the competitiveness of China′s fruit seedling seed.And it also was the basic factor to promote the healthy development of fruit nursery stock industry.Application of modern physics engineering technologies in agriculture already existed.Reasonable application of modern physics engineering technologies could improve seed vigor and crop yield，and reduce the use of pesticides and chemical fertilizers.Problems of fruit nursery stock seed in China were analyzed.Solution was analyzed according to modern physics engineering technologies，development ideas of fruit nursery stock seed in China were put forward.It provided reference for development and scientific decision of fruit nursery stock industry.